CisMols (Cis-regulatory Modules) is a tool that identifies compositionally predicted cis-clusters that occur in groups of co-expressed or related genes within their ortholog-pair evolutionarily conserved cis-regulatory regions.
The miRBase database is a searchable database of published miRNA sequences and annotation. All sequence and annotation data are also available for download.
TraFaC (Transcription Factor Binding Site Comparison) is a tool that identifes regulatory regions (conserved and shared cis regulatory elements) using a comparative sequence analysis approach.
- TRANSFAC Public
TRANSFAC® provides data on eukaryotic transcription factors, their experimentally-proven binding sites, consensus binding sequences (positional weight matrices) and regulated genes.
- TRANSFAC Professional
TRANSFAC® is a unique knowledge-base containing published data on eukaryotic transcription factors and miRNAs, their experimentally-proven binding sites, and regulated genes. The extensive compilation of binding sites provides the most comprehensive data set of transcription factor – gene interactions available.